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Error while running inpainting task using EvoDiff-seq

Open aksingh135 opened this issue 1 year ago • 0 comments

I was trying to run the IDR inpainting task and faced some issues:

Issue 1:

On running the example given on the GitHub: python evodiff/conditional_generation_msa.py --model-type msa_oa_ar_maxsub --cond-task idr --num-seqs 1

Error: Exception: ('Please select either msa_oa_dm_randsub, msa_oa_dm_maxsub, or esm_msa_1b baseline. You selected:', 'msa_oa_ar_maxsub')

Following the error message I changed the model to msa_oa_dm_maxsub:

python evodiff/conditional_generation_msa.py --model-type msa_oa_dm_maxsub --cond-task idr --num-seqs 1

I get the following error: KeyError: 'OMA_ID'

Issue 2:

When trying to run this command: python evodiff/conditional_generation.py --model-type oa_dm_38M --cond-task idr --num-seqs 1 --pdb 1bcf --start-idxs 20 --end-idxs 50 

Error: FileNotFoundError: [Errno 2] No such file or directory: 'data/human_idr_alignments/human_idr_boundaries.tsv'

I am aware that the source for the IDR was linked to the Reverse Homology GitHub, but I cannot find the appropriate file there as well. I have gone through all of their Zenodo repositories as well. I'd highly appreciate if I can be directed towards, or be given instructions on how to generate the human_idr_boundaries.tsv file as I am not familiar with 'OMA_ID'.

aksingh135 avatar May 14 '24 19:05 aksingh135