pybamview
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mgymrek
Browser based application for viewing bam alignments
Hey, I noticed that code in line 162 of browser/views.py (https://github.com/mgymrek/pybamview/blob/719c4251769510260d29287074845650b399a3d0/pybamview/browser/views.py#L162) is vulnerable to Remote Code Execution (https://en.wikipedia.org/wiki/Arbitrary_code_execution). The user input flows from the filename field of the HTML form...
Hi, My name is Kim Dong Seok who is the university student of South Korea. Nowadays I am studying RNA-Seq in my laboratory. I wanted to visualize my RNA mapping...
I've made a couple of small changes to be able to use the `bam_alignment` module from Python 3.
Things like rRNA that can have millions of reads in a single locus currently fail when all of those reads are loaded into memory. We should at least detect when...
Thank you Melissa such a small but very nice tool -- any plan to support for viewing paired end reads?
This is a longer term enhancement. I welcome discussion from others on this possible feature. The plan would be to also supply pybamview with a VCF, and then it would...