metno
install error osx
I ma trying to install gridpp on mac but keep getting error.
Building wheels for collected packages: gridpp Building wheel for gridpp (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-wheel-vw19civz cwd: /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/ Complete output (14 lines): running bdist_wheel running build running build_ext building '_gridpp' extension creating build creating build/temp.macosx-10.9-x86_64-3.8 creating build/temp.macosx-10.9-x86_64-3.8/src
Hope help or guidance to solve this error. Thanks
Was that the entire error message, or was there more? It's a bit hard to tell what went wrong here :)
Below entire error message:
Building wheels for collected packages: gridpp Building wheel for gridpp (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-wheel-vw19civz cwd: /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/ Complete output (14 lines): running bdist_wheel running build running build_ext building '_gridpp' extension creating build creating build/temp.macosx-10.9-x86_64-3.8 creating build/temp.macosx-10.9-x86_64-3.8/src creating build/temp.macosx-10.9-x86_64-3.8/src/api /usr/local/bin/gcc-10 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I./include -Iboost_1_74_0 -Iarmadillo-9.800.5/include -I/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c src/api/calc_gradient.cpp -o build/temp.macosx-10.9-x86_64-3.8/src/api/calc_gradient.o -Wall -Wfatal-errors -Wno-reorder -Wno-sign-compare -Wl,-init,initialize_omp -fopenmp src/api/calc_gradient.cpp:1:10: fatal error: gridpp.h: No such file or directory 1 | #include "gridpp.h" | ^~~~~~~~~~ compilation terminated. error: command '/usr/local/bin/gcc-10' failed with exit status 1
ERROR: Failed building wheel for gridpp Running setup.py clean for gridpp Failed to build gridpp Installing collected packages: gridpp Running setup.py install for gridpp ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-record-bp6zoyxz/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/sarr/Library/Python/3.8/include/python3.8/gridpp cwd: /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/ Complete output (13 lines): running install running build_ext building '_gridpp' extension creating build creating build/temp.macosx-10.9-x86_64-3.8 creating build/temp.macosx-10.9-x86_64-3.8/src creating build/temp.macosx-10.9-x86_64-3.8/src/api /usr/local/bin/gcc-10 -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I./include -Iboost_1_74_0 -Iarmadillo-9.800.5/include -I/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c src/api/calc_gradient.cpp -o build/temp.macosx-10.9-x86_64-3.8/src/api/calc_gradient.o -Wall -Wfatal-errors -Wno-reorder -Wno-sign-compare -Wl,-init,initialize_omp -fopenmp src/api/calc_gradient.cpp:1:10: fatal error: gridpp.h: No such file or directory 1 | #include "gridpp.h" | ^~~~~~~~~~ compilation terminated. error: command '/usr/local/bin/gcc-10' failed with exit status 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-3q_szwe5/gridpp_a06d2a2a72914e7886507b1e05c05784/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-record-bp6zoyxz/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/sarr/Library/Python/3.8/include/python3.8/gridpp Check the logs for full command output.
Thanks for the error report! I think I've fixed the problem with the source distribution. Could you try installing with the newest release (0.5.3) from pip? Let me know if that doesn't work.
I tried again but still getting error? pip install gridpp --user Collecting gridpp Using cached gridpp-0.5.3.tar.gz (164 kB) Requirement already satisfied: numpy>=1.7 in /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages (from gridpp) (1.18.4) Building wheels for collected packages: gridpp Building wheel for gridpp (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-wheel-iyu0onwd cwd: /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/ Complete output (12 lines): running bdist_wheel running build running build_ext building '_gridpp' extension creating build creating build/temp.macosx-10.9-x86_64-3.8 creating build/temp.macosx-10.9-x86_64-3.8/src creating build/temp.macosx-10.9-x86_64-3.8/src/api gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I./include -I/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c src/api/calc_gradient.cpp -o build/temp.macosx-10.9-x86_64-3.8/src/api/calc_gradient.o -Wall -Wfatal-errors -Wno-reorder -Wno-sign-compare -Wl,-init,initialize_omp -fopenmp -std=c++98 clang: warning: -Wl,-init,initialize_omp: 'linker' input unused [-Wunused-command-line-argument] clang: fatal error: unsupported option '-fopenmp' error: command 'gcc' failed with exit status 1
ERROR: Failed building wheel for gridpp Running setup.py clean for gridpp Failed to build gridpp Installing collected packages: gridpp Running setup.py install for gridpp ... error ERROR: Command errored out with exit status 1: command: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-record-m_26ya7r/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/sarr/Library/Python/3.8/include/python3.8/gridpp cwd: /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/ Complete output (11 lines): running install running build_ext building '_gridpp' extension creating build creating build/temp.macosx-10.9-x86_64-3.8 creating build/temp.macosx-10.9-x86_64-3.8/src creating build/temp.macosx-10.9-x86_64-3.8/src/api gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 -g -I./include -I/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/core/include -I/Library/Frameworks/Python.framework/Versions/3.8/include/python3.8 -c src/api/calc_gradient.cpp -o build/temp.macosx-10.9-x86_64-3.8/src/api/calc_gradient.o -Wall -Wfatal-errors -Wno-reorder -Wno-sign-compare -Wl,-init,initialize_omp -fopenmp -std=c++98 clang: warning: -Wl,-init,initialize_omp: 'linker' input unused [-Wunused-command-line-argument] clang: fatal error: unsupported option '-fopenmp' error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.8/bin/python3.8 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"'; file='"'"'/private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-install-u3yau5is/gridpp_a1bef123431c4e2fa90feb84f83acc3f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/wb/pry3ghxn4s30_yrgyynbrxs80000gn/T/pip-record-m_26ya7r/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /Users/sarr/Library/Python/3.8/include/python3.8/gridpp Check the logs for full command output.
For Mac Os X ARM64 (Ventura 13.4) it was relatively straightforward to build and install gridpp from source (although not as easy as just doing a pip install).
I used homebrew to install armadillo, and made sure to use my gcc installation instead of apple clang compiler, which gave me an error with libquadmath. Below are the steps I followed. Hereafter I was able to import and use gridpp from python.
Note that I also disabled to R build since I don't need that.
brew install armadillo
git clone https://github.com/metno/gridpp.git
cd gridpp
mkdir -p build && cd build
CC=/opt/homebrew/bin/gcc-13 CXX=/opt/homebrew/bin/g++-13 LD_LIBRARY_PATH="/opt/homebrew/lib" cmake -DCMAKE_INSTALL_PREFIX=$HOME/sw/ -DPYTHON_INCLUDE_DIR=$(python -c "import sysconfig; print(sysconfig.get_path('include'))") -DPYTHON_LIBRARY=$(python -c "import sysconfig; print(sysconfig.get_config_var('LIBDIR'))") -DBUILD_R=OFF ..
make build-python
cp extras/SWIG/python/gridpp.py $(python -c "import sysconfig; print(sysconfig.get_config_var('LIBDIR'))")/python3.1/site-packages/gridpp.py
cp extras/SWIG/python/_gridpp.so $(python -c "import sysconfig; print(sysconfig.get_config_var('LIBDIR'))")/python3.1/site-packages/_gridpp.so
