MetaCoAG

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Hello, I've installed MetaCoAG 1.1.4 with mamba but it cannot find run_FragGeneScan.pl, while it is present. I've not experienced something like this before. ``` $ mamba activate mags (mags)$ which...

bheimbu

KeyError contig_4488

2

Hello Vini, I got a have been using MetaCoAG for a while, works well most of the time until I got a `KeyError: contig_4488`. The dataset Ive been working on...

ZarulHanifah

Use distributed computing to distribute and bin multiple metagenomes. Sample MPI code: [https://github.com/Vini2/distribin](https://github.com/Vini2/distribin). Use Cogent3's parallel computing capabilities [https://cogent3.org/doc/examples/parallel.html](https://cogent3.org/doc/examples/parallel.html).

Vini2

question of megahit

7

Hello! Sorry to bother you again. I ran several experiments with metacoag. There is no problem with running in **spades** mode, but this error is always reported when running several...

yuyuyu-fy

ENH: Add support to input depth file from MetaBAT2

2

Add support to input depth file from MetaBAT2's `jgi_summarize_bam_contig_depths`.

Vini2

KeyError: 'Contig'

1

metacoag --assembler megahit --graph final.contigs.gfa --contigs final.contigs.fa --abundance abundance.tsv --output /xx/short_real_result/Metacoag Traceback (most recent call last): File "/xx/tools/MetaCoAG-develop/metacoag", line 1066, in main() File "/xx/tools/MetaCoAG-develop/metacoag", line 279, in main ) =...

htaohan

Is process hanging or will it just take a while?

5

I love the concept for MetaCoAG; what a great idea! I'm trying to use your awesome tool to bin contigs from a 30 Gbp MEGAHIT metagenomic assembly with 35 million...

nmb85

coverage across multiple samples for binning

1

Hello, thanks for developing this tool. In the metacoag paper you write: > MetaCoAG can be easily extended to work with other metagenomics assemblers. In the future, we plan to...

franciscozorrilla

DEV: port to use cogent3 sequence parsing / writing

1

GavinHuttley

UnboundLocalError: local variable 'my_matching' referenced before assignment

1

Hello, I have managed to run metacoag on 9/10 flye-based nanopore assemblies, but I get the following error on one of my samples: Is it maybe related to the low...

franciscozorrilla