GraphBin

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Add args.paths validation for Flye input to check that `assembly_info.txt` is provided.

Vini2

Use nox for the testing suit

Vini2

Can GraphBin be used with a co-binning approach?

2

I've used MEGAHIT to assemble samples individually, and then ran vamb in order to bin them all together. I was wondering whether GraphBin can cope with / be used to...

Laura-Alex

qusetion of score

1

[](https://github.com/Vini2/GraphBin/issues/new###)[](javascript:void(0);)[](https://github.com/Vini2/GraphBin/issues/new###) Hello, I want to ask you how to calculate ARI in graphbin, because the number of contings marked by different bining tools is different. For example, metabat has a...

mant-ux

Integrate coverage information from co-assemblies to make use of differential coverage across multiple samples.

Vini2

[Feature Request] Multiple binning input options

3

Is it possible to add a matrix of binning methods? For example in the test data you have maxbin2, metabat2, etc. Can all of these be used at once?

jolespin

Threads option for GraphBin

1

Hi! I was wondering if there is any threads option for GraphBin. The help page for the command did not mention any such option for the tool and wanted to...

ashwinssudarshan

Hello, I am running graphbin v 1.7.1 and python version 3.10.13 First, I was unable to get the python support scripts to work so I renamed all of my files...

emilyjunkins

Bumps [jinja2](https://github.com/pallets/jinja) from 3.0.3 to 3.1.3. Release notes Sourced from jinja2's releases. 3.1.3 This is a fix release for the 3.1.x feature branch. Fix for GHSA-h5c8-rqwp-cp95. You are affected if...

dependabot[bot]

Hello, Is there a way to restart Graphbin from a checkpoint if something fails? I had a script running for 4 days that failed due to a node issue and...

tarunaaggarwal