SCDC

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When i run this line... - deconv

Shikari666

Hi, I struggle to download the SCDC package in my R script for spectral deconvolution. I have tried to use the following installation from GitHub: if (!require("devtools")) { install.packages("devtools") }...

AndreasHK1

Error in the SCDC_ENSEMBL function

9

Hi there! I'm testing the SCDC package to use in one of my analysis. I'm following the code from the vignette for bulk RNA analysis, however, I'm not being able...

iaradsouza1

If both methods (BR and EM) are present when using the lad function, it will report an error: Error in switch(method, BR = lad.fit.BR(x, y, tol), EM = lad.fit.EM(x, :...

anijudy

库( SCDC ) #> 警告：用 'tibble::data_frame' 替换之前的导入 'vctrs::data_frame' #> 加载 'dplyr' 时 counts

yaqiongliu

Issue with Vigenette

1

Hi, I getting following error, while following the vignette. ``` error in switch(method, BR = lad.fit.BR(x, y, tol), EM = lad.fit.EM(x, : EXPR must be a length 1 vector ```...

srmeetd

Hello, bulk entry: 192 samples of bulk RNAseq from 4 conditions, six samples with eight replicates each scRNAseq: 12 samples from 2 conditions 3-time points with two replicates providing 11...

adrdufour

Error when using SCDC_prop

2

Hi, I'm getting an error when attempting to perform SCDC with batches using `SCDC_prop`. The exact error I'm getting is: ``` Error in sc.basis$sigma[commongenes, ct.sub] : subscript out of bounds...

doliv071

Dear, I am interested in using SCDC as cell type deconvolution using ATAC-seq datasets. Can I use different input formats other than Expressionset? otherwise, how can I pre-process the data...

seoyeonoh12

Hello, Thank you so much for designing this program for the field to use. We are running into an issue with the initial SCDC install: > devtools::install_github("meichendong/SCDC") Downloading GitHub repo...

GUnit-Lab