Matthew Bernstein

The following samples should be 'tissue' samples ``["SRS373348", "SRS294661", "SRS475185", "SRS183553", "SRS183551", "SRS294662", "SRS294664", "SRS267047"]``

These are 'cell line' samples from this cell line: https://web.expasy.org/cellosaurus/CVCL_7162 See description: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2290285

These are 'in vitro differentiated cells' See supplement to the publication: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4893171/#SD15 Quote in the supplement: 'Mobilized peripheral blood CD34+ cell culture was performed using a three-stage system that has...

These are 'in vitro differentiated cells' See publication: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933219/ Quote of interest: 'Naive CD4+ CD45RA+ T cells were isolated from peripheral blood mononuclear cells to a purity >98% using Miltenyi...

The following samples should be mapped to term for 'Down Syndrome' (DOID:14250): ``[ "SRS1569764", "SRS1569768", "SRS1569769", "SRS1569745", "SRS1569775", "SRS1569774", "SRS1569770", "SRS1569757", "SRS1569755", "SRS1569753", "SRS1569752", "SRS1569751", "SRS1569772", "SRS1569762", "SRS1569763", "SRS1569760", "SRS1569748",...

This was activated in vitro See publication: https://www.nature.com/articles/ncomms6465#s1

These are 'educated' macrophages in the presence of passaged mesenchymal stem cells. Therefore these cells should be 'in vitro differentiated cells' See publication: https://www.sciencedirect.com/science/article/pii/S1083879117303063?via%3Dihub

HUVEC's were used in passages 5-8 and therefore are 'cell line' samples See publication: https://www.physiology.org/doi/full/10.1152/physiolgenomics.00132.2016

The following are 'in vitro differentiated cells': ``[ "SRS616738", "SRS616739", "SRS616745", "SRS616744", "SRS616746", "SRS616741", "SRS616740", "SRS616743", "SRS616742" ]`` The following are 'induced pluripotent stem cells': ``[ "SRS616752", "SRS616750", "SRS616751", "SRS616749",...

Cells in this study were 'pre-activated'. This constitutes 'in vitro differentiation' by our definition