dee2
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markziemann
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
This looks like a more stable alternative https://github.com/saketkc/pysradb
6th FEB 2020 | no. SRX -- | -- Arabidopsis thaliana | 30890 Zea mays | 19753 Oryza sativa | 9737 Triticum aestivum | 6924 Solanum lycopersicum | 6444 Sorghum...
Hello, I was wondering about the annotation version you were using for processing mouse experiments using Kallisto. Ensembl 90 annotation has 131,195 unique transcripts; however, the cDNA file you've used...
hi, Looking up at the [server](https://dee2.io/huge/hsapiens) files for human, apparently, there have not been new samples added to the DEE2 pipeline since 2021. For that reason, I want to run...
So there is a known issue where this happens https://github.com/relipmoc/skewer/issues/24 (Perhaps unsuprisingly... from Torsten!) Solution is to run with -f sanger. skewer -f sanger SRR6747861_1.fastq SRR6747861_2.fastq
Some new CPUs have >64 cores and so might benefit from caps to the number of parallel jobs, as skewer and other apps cannot efficiently use such high numbers of...
I think it would be more informative and professional to have different `` texts for the pages. Currently the majority are "DEE2", e.g. https://dee2.io/ https://dee2.io/search https://dee2.io/stats https://dee2.io/request Whereas the later...
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Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data