PySpike

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RFE: Move away from using deprecated nose for testing

1

# Feature nose is deprecated, so it'll be good to move to another testing tool, perhaps py.test. # Motivation nose is deprecated upstream (the last commit was in 2016.) and...

sanjayankur31

Hello, Thanks for uploading this. I notice that the measures in this repo find relationships between spike trains even when ISIs are shuffled or jittered. For example, here is a...

Ruairi-osul

Deleted print statements that Issue #57 brought up.

xhulianoThe1

When calling the `spike_distance()` function I'm getting a ton of unnecessary prints to `stdout` as can be seen in the following:  I traced back part of the issue to...

thomast8

SPIKE distance value higher than 1

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Hi, in my analysis I found some examples in which the spike distance profile gives values higher than 1 (even around 30) towards the end of the interval. Do you...

irenemalvestio

cannot install PySpike

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pip install pyspike (Mouse) farazmoradi@farazs-MacBook-Pro Mouse % pip install pyspike Collecting pyspike Using cached pyspike-0.6.0.tar.gz (1.5 MB) Requirement already satisfied: numpy in /Users/farazmoradi/.conda/envs/Mouse/lib/python3.9/site-packages (from pyspike) (1.20.2) Building wheels for collected...

farazmoradi

add pyproject.toml to ensure pip builds have Cython and numpy

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`pip install pyspike` will often fail if Cython is not already in the environment because the C-code stored in the source tree may not work with newer versions of python....

dmeliza

Can not install PySpike with python3

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sudo pip install pyspike running with latest anaconda, using MacOS ``` gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/anaconda3/include -arch x86_64 -I/anaconda3/include -arch x86_64 -I/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/anaconda3/include/python3.7m -c...

orena1

no documentation describing how to make scale for plots similar to Fig4 in the PySpike paper in SoftwareX

dohalloran

I encountered an issue today when using `generate_poisson_spikes` to create a series of SpikeTrains across distinct intervals, and then merging them using `merge_spike_trains`. Currently both `t_start` and `t_end` come from...

jonathanjouty