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How to change the mapQ and τ？

Open wangzhennan14 opened this issue 4 years ago • 1 comments

Dear @cjain7, I would like to seek you help please! I want to change the mapQ and τ value to improve alignment accuracy, but I do not find how to change the parameters? Could you tell me how to modify the parameters，please? Thank you very much! Best wishes, ZhennanWang

wangzhennan14 avatar Aug 20 '21 05:08 wangzhennan14

See min_mapq parameter in options.c. Currently this is not exposed via command line.

cjain7 avatar Aug 20 '21 08:08 cjain7