Compare multiple species ?

[ptranvan]

Hi,

I have 5 species to compare and would need a matrix of pairwise distance at the end.

I have tried to follow your tutorial but I am not sure how to do with > 3 species.

Is it possible ?

[tseemann]

@ptranvan do you mean you 5 samples with genome sequence? do you have assembled contigs, or FASTQ reads? mash triangle is what you want in either case