Michael Alonge

Hi there, So the direct error is that RagTag `scaffold` is trying to write an improperly formatted AGP file. But I can't tell why this is happening in the first...

Hi there, Unfortunately, things have gotten lost in the shuffle and I don't remember where we stand on this. Please respond here or email me if I am supposed to...

So the one I am looking at currently is a little different than I described. First, I align these [MHAP human genome contigs](https://www.ncbi.nlm.nih.gov/assembly/GCA_000772585.3/) to the GRCh38 reference and that takes...

Interesting I will take a look at the memory usage. Thanks for the help. And thanks for the advice for another CHM1 assembly.

Hi there, Looks like your fasta file is incorrectly formatted. Try to use the fasta file with other standard tools to confirm that it's properly formatted. For example, perhaps your...

Hi there, Sorry about the delays. I would use standard command line tools to check if both AGP files contain identical sets of AGP components. I understand that it's the...