MADELEINE

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Generalization to another anatomical sites

1

Really nice work, congrats! (1) What are your feelings about the generalization capability of MADELEINE (w/o fine-tuning) to another anatomical sites different to breast and kidney? I mean, using MADELEINE...

PabloMeseguerEsbri

- Move all core methods to hestcore - Refactor TileEmbedder/Dataset - Use singleton object for segmentation

pauldoucet

## Problem It is currently impossible to create the model via `madeleine.models.factory.create_model_from_pretrained` without cuda availability due to the following line. [madeleine.models.factory import create_model_from_pretrained](https://github.com/mahmoodlab/MADELEINE/blob/419287dc60a57296d959840b893481019c4f0d21/madeleine/models/factory.py#L32) ## Fix If I don't miss anything,...

FloCF

Reproducibility

2

Can you provide the hyperparemetres for the reproducibility of few-shot learning for TCGA Breast of MIL models?

PabloMeseguerEsbri

Thank you for the great work and for sharing the code. I was wondering if you could clarify what feature extractor was used for patch-level feature extraction in the MIL...

thomascong121