BioDSL

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filesys.rb line 85 have a dependency on `file` being installed

maasha

merge sequences using a stretch of N's to avoid false kmers in classification

maasha

I suppose if the input sequence is shorter than the kmer_size a segfault is ensured.

maasha

/home/maasha/install/lib/ruby/gems/2.1.0/gems/biopieces-0.5.6/lib/biopieces/config.rb:43:in `': undefined method`[]' for nil:NilClass (NoMethodError)

maasha

If a pipe fails it should be optional to have an email alert.

maasha

E.g. output from gnuplot, usearch, etc that is currently redirected to /dev/null

maasha

Something strange happened with the new CSV implementation.

maasha

It would be good to be able to do: ``` BP.new.dump.run(email: "[email protected]", subject: "all done") ```

maasha

If you ask for headers not present in the table it misbehaves!

maasha