polyRAD

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Best practice for Multiparent population

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Hi, THanks @lvclark for developing this package. We have a multiparent heterozygous autotetraploid population with four families, one shared pollen donor and four mums, so offspring is half siblings. Our...

jjdevega

Support pedigreed populations

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I'd like to make a new pipeline that uses pedigree information. Genotype estimates of parents and offspring will iteratively influence genotype priors of parents and offspring. Even for biparental populations,...

lvclark

Export to additional population genetics formats

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## Overview There has been some interest in using genotypes called by polyRAD for population genetics analysis. Two pieces of software that have long supported polyploid genotypes are [Structure](https://web.stanford.edu/group/pritchardlab/structure.html) and...

lvclark

Export to and import from updog

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It would be nice to have some convenience functions to convert between a `RADdata` object and the input and output of [`updog`](https://github.com/dcgerard/updog). This would allow users to take advantage of...

lvclark

PolyRAD VCF2RADdata Error - "Either possiblePloidies or taxaPloidy must consist entirely of even numbers" - Is this a bug?

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Dear PolyRAD developers/community, I am encountering an error when using the VCF2RADdata function in PolyRAD and would like to confirm whether this is expected behavior or a potential bug. ```...

YI-164

polyRAD

1

Hello Lindsay, I hope this email finds you well. I am currently conducting research on population genetics in autotetraploid alfalfa. My research species is a highly heterozygous, outcrossing autotetraploid. We...

xibeixingchen