lutteropp
Effect of branch-length linkage on Network inference
We need an additional experiment that investigates how the brlen-linkage (especially scaled vs. unlinked) affects the NetRAX inference results.
yes, we do ...
On 07.12.20 15:18, Sarah Lutteropp wrote:
We need an additional experiment that investigates how the brlen-linkage (especially scaled vs. unlinked) affects the NetRAX inference results.
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/lutteropp/NetRAX/issues/28, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAGXB6SDUHKDQXTDOJ2R2XDSTTIY5ANCNFSM4UQOKA6A.
-- Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
www.exelixis-lab.org
This issue is going into that direction: https://github.com/lutteropp/NetRAX/issues/33
There we have an example with a 4-taxon 1-reticulation network. Both displayed trees have the same topology, only one branch length can differ among them. Unlinked branch lengths will favor a tree, while linked or scaled branch lengths will favor a reticulation.