在运行sabdab.py代码，发生报错

[jinzhuwei]

在运行sabdab.py代码，发生报错，请问该如何解决呀 第一个错误：报ValueError: invalid literal for int() with base 10: 'V'异常， 第二个错误如图，请教这两个问题都是怎么合理解决的呀

[hhhhh789]

I‘ve encountered the same issue , it stucked at 19% at my case

[jinzhuwei]

定位到报错的语句，在那块位置改为if---else---语句

[llllly26]

发生异常: ValueError invalid literal for int() with base 10: 'X' File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 314, in _preprocess_structures data_list = joblib.Parallel( File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 286, in _load_structures self._preprocess_structures() File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 228, in __init__ self._load_structures(reset) File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 443, in get_sabdab_dataset return SAbDabDataset( File "/home/ubuntu/wcl/github/diffab/diffab/datasets/_base.py", line 17, in get_dataset return _DATASET_DICT[cfg.type](cfg, transform=transform) File "/home/ubuntu/wcl/github/diffab/train.py", line 56, in <module> train_dataset = get_dataset(config.dataset.train) ValueError: invalid literal for int() with base 10: 'X'

why？数据问题吗？还是什么呢？

[jinzhuwei]

需要修改数据预处理PDBParesr.py的源代码

lllliy @.***> 于2024年9月14日周六 11:16写道：

发生异常: ValueError invalid literal for int() with base 10: 'X' File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 314, in _preprocess_structures data_list = joblib.Parallel( File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 286, in _load_structures self._preprocess_structures() File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 228, in init self._load_structures(reset) File "/home/ubuntu/wcl/github/diffab/diffab/datasets/sabdab.py", line 443, in get_sabdab_dataset return SAbDabDataset( File "/home/ubuntu/wcl/github/diffab/diffab/datasets/_base.py", line 17, in get_dataset return _DATASET_DICT[cfg.type](cfg, transform=transform) File "/home/ubuntu/wcl/github/diffab/train.py", line 56, in train_dataset = get_dataset(config.dataset.train) ValueError: invalid literal for int() with base 10: 'X'

why？数据问题吗？还是什么呢？

— Reply to this email directly, view it on GitHub https://github.com/luost26/diffab/issues/21#issuecomment-2350808489, or unsubscribe https://github.com/notifications/unsubscribe-auth/BAOE47RSNRZ5PZSOCHP6T73ZWOTBBAVCNFSM6AAAAAAZKAD4FKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNJQHAYDQNBYHE . You are receiving this because you authored the thread.Message ID: @.***>