AMON
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lozuponelab
Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data
Documenting email conversation with @acolorado1 in case others run into this Sofia: > Currently trying to run 3 pairwise comparisons with AMON (e.g., 3 files total and AMON takes 2...
Hi, I'm using AMON in my metagenomic data. I have 79 MAGs, and in 70 I was able to run it without problems. But for 9 of them I get...
Issue
Hello, Thanks for your work. I am trying to tun AMON but I do not seem to be able to get any results out. Specifically, I always encounter this problem:...
Hi, I am getting a bad http request error when trying to run AMON. Doesn't seem to matter what I use as input, even with 10 KO's as input I...
Hello! Could you indicate to me where to find information regarding the "pathway size", and "overlap" columns in the "gene_set_1_compound_pathway_enrichment.tsv" file. I do not know what they mean. Thanks!
Despite the documentation saying that CSV files are an acceptable input format this is not the case. Two senarios: 1. Combination of .txt and .csv files (`-i` and `--other_gene_set`) resulted...
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Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data