Getting top N results

[cguetot]

Hi,

I came across a paper related to PepNet. I want to integrate it in my de novo sequencing pipeline, but I am wondering if it is possible to get the top N best candidate peptides for each spectrum.

Best,

Carlos

[lkytal]

The output of the model is a softmax over all amino acids at each position, you could decode top N best peptides form it if you like.