LncPipe
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likelet
A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
hello, i installed the nextflow following offline instruction and then i tried to run it and i got this error: nextflow run ~/my-pipelines/nf-core/lncpipe-master N E X T F L O...
Dear all, I tried to use the LncRNAanalysis pipeline using the following command: ``` ubuntu@powerfulcurie-97d42:~/bigdata/alicia/phd/SarsCovSeq_project/lncRnaSeqData$ nextflow run LncRNAanalysisPipe.nf -profile standard,conda,run --reads '*_{1,2}.fq.gz' --gencode_annotation_gtf gencode.v38.annotation.gtf --lncipedia_gtf lncipedia_5_2_hg38.gtf --hisat2_index GRCh38.p13.genome.fa N E...
I'm facing the problem (likely related to grep (Discussed here probably: https://github.com/likelet/LncPipe/issues/41#issuecomment-526463662 ) as an empty file is generated) since a few days. Could you please have a look and...
LncRNAanalysisPipe was performed using your test data, but It can not be completed. N E X T F L O W ~ version 20.04.1 Launching `LncRNAanalysisPipe.nf` [prickly_poitras] - revision: 32d1fd7240...
- [x] provide input format for [IDEA](https://github.com/likelet/IDEA) - [ ] Add lncRNA identification method by LGC(http://bigd.big.ac.cn/biocode/tools/BT000004) - [ ] integrate report by MultiQC(http://multiqc.info/) - [ ] Functional classification by [SEEKR](https://www.nature.com/articles/s41588-018-0207-8)...
This seems to be an issue logs are here ` Check script '/root/.nextflow/assets/likelet/LncPipe/LncRNAanalysisPipe.nf' at line: 1038 or see '.nextflow.log' file for more details` logs are here ``` Sep-20 14:17:05.816 [Actor...
