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Compilation Issue

Open dhirudubey opened this issue 3 years ago • 5 comments

I am trying to setup Semrep on my local machine so that I can regenerate binary file to use. can anybody help me in that?

dhirudubey avatar Dec 27 '22 11:12 dhirudubey

Please follow the instructions for installation. If you have specific questions or issues, we can try to help.

kilicogluh avatar Dec 29 '22 23:12 kilicogluh

I followed this file https://github.com/lhncbc/SemRep/blob/master/specialist/SAW/doc/Local_SemRep_compilation.pdf but none of the command working. I wanted to regenerate the new Binary file of Semrep Predication. image

dhirudubey avatar Dec 30 '22 07:12 dhirudubey

The PDF file you're referring to is not for local installation of SemRep. To install SemRep locally, follow the instructions in https://github.com/lhncbc/SemRep/blob/master/README.md.

kilicogluh avatar Jan 01 '23 21:01 kilicogluh

After installing semrep when I am running it for Test. It is giving error. I downloaded semrep file from https://lhncbc.nlm.nih.gov/ii/tools/SemRep_SemMedDB_SKR/SemRep_download.html image

SAWenv ../src/a.out.Linux -SDFy --negex_st_set ALL test.ml test.ml.SDFy.TEST.OUT ./runTest_v1.8.sh: 82: SAWenv: not found ERROR: test.ml.SDFy.TEST.OUT is zero length.

dhirudubey avatar Jan 02 '23 04:01 dhirudubey

And normally its giving relation between Entities but its not giving relation between GENE like image

its not giving relation between Genes 'Spc24p' , 'Spc25p' , 'Ndc80p', 'Nuf2p'.

dhirudubey avatar Jan 02 '23 04:01 dhirudubey