learning-MD

Hmm, it's all human PBMCs. The interesting thing is that running TRUST4 on the fastq files does seem to generate reads:  The only problem I had there was that...

@mourisl Apologies for the delay - when I checked for unmapped reads in that BAM file, I would get errors despite the head and tail looking "normal". So, I actually...

Thanks - it looks like immunarch recently upgraded to single-cell capacity as well. And for some things, like number of clones per sample, I'm able to get results:  But...

Thanks @mourisl - after lots of banging my head against the desk, I think I found a solution. I just need to import 2 sets of files into immunarch -...

@tinyi - thanks for this great package! Is it possible for you to share the scripts you used for the other figures? I'm working with some non-tumor samples to see...

@Alexander230 I was successful in making the metadata file (using barcodes from my Seurat object to merge with the barcodes from the TRUST4 output). However, when I convert the TRUST4's...