HumGut

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Updating genomes taxonomy and adding other viruses and fungi genomes

3

Hi, I'm very much interested in using the HumGut database, but I have a few questions about the taxonomy files. 1) I wanted to include the Kraken DB for viruses...

Lucas-Maciel

Build a Kraken2 db, adding groups not included in HumGut

2

Dear developers, I would like to use HumGut and Kraken2 to analyze some human gut microbiome data, and expanding the database to include other taxonomical groups not covered by HumGut,...

mjgommo

Build a kraken2 db using HumGut

3

Hi, want to know ho to deal with your HumGut file from http://arken.nmbu.no/~larssn/humgut/ Thanks

antgomo

The tar file seems corrupted? https://arken.nmbu.no/~larssn/humgut/HumGut2.tar.gz ``` ... fna/GUT_GENOME109309.fna.gz fna/GUT_GENOME286501.fna.gz fna/GCF_000701665.1_ASM70166v1_genomic.fna.gz gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is...

xinehc

Inconsistencies in the GTDB taxonomy

5

Thanks for putting HumGut up online! I find some inconsistencies in the GTDB taxonomy names when comparing to the taxononmy names in the [GTDB 226.0 release](https://data.gtdb.ecogenomic.org/releases/release226/226.0/). I find 3294 unique...

jonalm