HALC output

Open edgarsierraorozco opened this issue 5 years ago • 0 comments

I am trying to use HALC to correct long reads. I get this output that I haven't figured out how to use:

[e.sierra@login3 output]$ head HALC.corrected.fa

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

Any ideas????

Oct 21 '20 15:10 edgarsierraorozco