aPEAR
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kerseviciute
Enrichment Networks for Pathway Enrichment Analysis
Hi， The following error is reported while installing aPEAR: ``` 267: edges %>% 268: .[ , xStart := lapply(from, \ ^ ``` Can it be solved? Thanks
Hi, Thank you for creating such a useful package. I have a straightforward question to ask you. After running the function “enrichmentNetwork”, the text in the output PDF file exceeds...
Thank you for providing such a good interactive plotting method to visualize the enrichment results. However, I would like to hide/remove the text on the graph nodes, how can I...
I am using aPEAR in Rstudio, with the version aPEAR_1.0. It worked perfectly in a cloud computing env. However, in Rstudio, when I tried to use findPathClusters, I got the...
library(Spectrum) enrichmentNetwork(enrich@result, clustMethod = as.character("spectral"), drawEllipses = T, fontSize = 2.5, repelLabels = T ) Error in as.character(package) : cannot coerce type 'closure' to vector of type 'character' Thank you...
A problem has arisen with the installation of this package. This fixes it. Also, more information has also been added on how to install the required packages. ```R > devtools::install_github('ievaKer/pathExplore')...
Is it possible to further analyse specific clusters from the results of enrichmentNetwork()? Some cluster names don't seem to fit the clusters. Any suggestions for further analysis? Best regards, Glenn
-Is it possible to change the automatically attributed cluster names on the enrichmentNetwork plot? Even though it's a ggplot object, I couldn't find a way to manually change what is...
The [CRAN v1.0.0](https://cran.r-project.org/src/contrib/Archive/aPEAR/) is not available anymore for direct installation. Updating the GitHub will allow the import of the package in other packages using Remotes. Furthermore, in the current version...
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Enrichment Networks for Pathway Enrichment Analysis