Kaptive

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GenBank output not found.

2

Hi, For each input assembly I have used, Kaptive did not produce the Genbank file for the region (s) in the assembly that match the best locus of interest match....

Taalouane

Classification with reads instead of assembled genomes?

3

In my data set unfortunately many genomes have low ("None" or "Low") confidence for the CPS type for Klebsiella. I understand this may be due to sequencing error or failure...

stitam

Creating Locus References Database

2

Hi, I am new to Kaptive. I wonder if there is an argument to help me create locus references database through Kaptive or if that you can add this input...

ne1al

Hey, I have been having having issues uploading a zip file containing my fasta files, and I keep receiving the no fasta file error message. I attached a picture of...

danielmora0

Graphical issues with the web server

2

Hi, I have been having issues with the graphical interface of the Kaptive web server and was hoping someone might know how to solve the issue. I have tried submitting...

claire-elek

@kelwyres I wasn't 100% sure from the supplementary how the new nomenclature affects the O-subtype logic so I have left some gaps in the logic.

tomdstanton

Klebsiella oxytoca and Klebsiella aerogenes

2

Dear all, do you know if these two species share the same gene cluster for O-antigen and can be typed using Kaptive, similar to K. pneumoniae? Bests, -A

abrozzi