SeqPrep
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jstjohn
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
Hello, I am running SeqPrep and had this error: Fastq id lines do not match: SRR1640752.230 230 length=91 vs SRR1640752.230 230 length=250 From what I understand the program complains because...
For Data processing In [GSM1827405](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1827405) author wrote that "Overlapping reads were merged using SeqPrep and split in half with a Awk routine. Paired-ends with one read shorter than 30 bp...
Hello, I was wondering if someone could help me? I've been trying to adapter trim and merge my dataset using Seqprep, but when I plot the read lengths after merging,...
Hi, I am trying to install SeqPrep in my Dell server. But It is giving error as gcc -c -Wall -Werror -O0 -g SeqPrep.c -o SeqPrep.o SeqPrep.c: In function ‘main’:...
Hello! The report at the end of the run always shows Pairs Processed: 0. Enabling the spinner (-S) solves the problem, but I prefer not having the spinner when redirecting...
Hi! First of all sorry for bothering you on this channel but I don't find any opportunity to contact you on mercurial repository. I would like to ask if there...
Hi, I encounter an issue (exit code 139) with this error message Processing reads... |/tmp/.lsbtmp4010/.lsbatch/1433770267.781893: line 8: 10935 Segmentation fault (core dumped) /nfs/seqdb/production/interpro/development/metagenomics/pipeline/tools/bin/SeqPrep -f ERR884064_1.fastq -r ERR884064_2.fastq -1 ERR884064_1_paired.fastq.gz -2...
I was trying to process a pair of files (attached) with the command below, and inevitably I will get a segmentation fault. When I shorten the size of the files,...
I'm getting weird compiler errors where functions are "declared but never defined"! System info ``` lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 15.10 Release: 15.10...
