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verified publisher icon jordanlab
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Fast k-mer based tool for multi locus sequence typing (MLST)

Results 4 stringMLST issues
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Missing stars in output

No matter how high I set the -z value, there are no stars. Removing the backslash in the line below fixes the problem for me. https://github.com/jordanlab/stringMLST/blob/84e74334783321c463d93d2cc11648cc8a1df2d3/stringMLST.py#L604

andreott avatar andreott

Catching errors with batch file handling

Produce an error and exit when no file (in the right format) are found in the query directory

lavanyarishishwar avatar lavanyarishishwar

bug
enhancement

Cut a 1.0.0 release

It's probably time to release 1.0. stringMLST has been feature complete and stable for quite some time now

ar0ch avatar ar0ch

enhancement

Accuracy

4 comment

Hi, I am using stringMLST and I noticed that I got different results for running the same sample more than once. The database changed (updated). What was surprising that some...

ralphmatar avatar ralphmatar

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verified publisher icon jordanlab

Metadata

Fast k-mer based tool for multi locus sequence typing (MLST)

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