ComplexHeatmap

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jokergoo

Cannot find concatenated vertically function

1

I tried to concatenate two heatmaps vertically, but I received this error. I have attached my session info. > ht_list = ht1 %v% ht2 %v% ht3 Error in UseMethod("get.vertex.attribute") :...

zhuhenan

About the legend alignment

1

These days, I have been using the ComplexHeatmap to visualize my training data. While making plots, I stuck at the aligment of legends attached below.  For explaining easily, I...

omrctnr

Possible to add brackets and significant stars besides the oncoprint heatmap?

1

Hi, I have tried to create the oncoprint and I’m wondering is it possible to add significant stars besides the oncoprint, like this?  Or this  I have tried...

LitingKu

Hi! Thanks for your package it's one of my favourites! I'm making an upset plot and noticed that I am not allowed to use more than 2 background colours (when...

danphillips28

order of columns in top annotation not matching the heatmap

1

Hi, Thanks for the wonderful and flexible package. I created a heatmap object based on Complex Heatmap using ArchR. I need to re-order the columns and change the top annotation....

cristanchoa

row_split reorders row_order even with cluster_row_slices = FALSE

9

Hi @jokergoo I am unable to control the heatmap ordering when using `row_split` and `row_order` even when specifying `cluster_row_slices = FALSE`. The row order is correct when I don't specify...

ojziff

selecting top n from clusters in heatmap - visualize top n

9

Hi all, I made a heatmap using complex heatmap and it is clustered by rows and column. There being several row names the heatmap is dense and I wish to...

pdhrati02

- [ ] Check anno_mark() or maybe other functions which reply on absolute size of the device on Jupyter book #837 - [x] Speed up `Heatmap()` #832 - [ ]...

jokergoo

Heatmap with pre-defined dendrogram, margin ordering

9

Hello, thank you so much for this fantastic library that I've recently started using. In one of my use cases I have a hiearchical clustering on the columns that is...

micans