UpSetPlot
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saved images in juypter notebook have a gray background
Great package. Really fast and easy
My plots look great in juypter notebook. All the plots have a white background however when I save it to disk them to disk the intersection size plot has a white background as expected. The other plots are grey?
fig = plt.figure(figsize=(figureWidthInInches,figureHeightInInches))
pltDict = UpSet(geneSetsUpsetPlotData, show_counts=True, min_degree=4).plot(fig)
aedwipFile = "aedwip.png"
fig.savefig(aedwipFile, dpi=300, bbox_inches='tight')
If I set facecolor all the plots have the expected white background
fig = plt.figure(figsize=(figureWidthInInches,figureHeightInInches))
pltDict = UpSet(geneSetsUpsetPlotData, show_counts=True, min_degree=4).plot(fig)
aedwipFile = "aedwip.png"
fig.savefig(aedwipFile, dpi=300, bbox_inches='tight', facecolor='white')
p.s. you might want to add some sort of FAQ . how to save image in juypter notebook,
Kind regards
Andy