Jeremy Muhlich
Jeremy Muhlich
As I mentioned in your other issue over on minerva-author, could you try the pre-built release at https://github.com/labsyspharm/minerva-author/releases ?
What kind of image files will you be using? We might be able to develop a workaround depending on whether you have OME-TIFF files or something else.
Are you running the pre-built release available from https://github.com/labsyspharm/minerva-author/releases ? That should solve the package and environment issues.
Sure! The test is to encode the 3 strings below as XMLAnnotation Values, write them to an ome-xml document (inside a larger OME structure of course), then read that ome-xml...
I guess there is also the small issue that actual XML content won't have whitespace preserved (like in my second example value) but if it's semantically equivalent that should be...
This is off-topic but since the OME team has been summoned :grin: , why does PathViewer store raw JSON in XMLAnnotations in the first place rather than something like CommentAnnotation?...
Need to resolve #596 to get this to pass CI.
Thanks for the report. It looks like sympy 1.12 is not released yet, but we will try to get this pysb issue fixed before then.
Addressed for now in #581, but we'll leave this issue open as a reminder to fix the underlying issue for sympy 1.12 compatibility.
Thanks for the reminder. #599 should fix the issue. Once that's merged I'll release a new pysb version.