jinworks
Incorrect target cell groups plotted with netVisual_chord_gene
Hello,
Thank you for the great tool.
I have consistently had trouble with the netVisual_chord_gene function, particularly with the target.use argument. On occasion, with certain datasets, the function will plot additional target cell groups along with the ones listed in targets.use. Please see below for example.
par(mfrow=c(1,1), xpd=TRUE) netVisual_chord_gene(cellchat.C, targets.use = c("Basal"), title.name = "Control - Inflam LR pairs towards Airway Cells", signaling = inflam.pathways.C, legend.pos.x = 8)
B cells are clearly being plotted as target cells as well. This has been an ongoing issue. Could you please provide some guidance as to why this may be happening.
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