fulgor
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jermp
Fulgor is a fast and space-efficient colored de Bruijn graph index.
Hi @jermp ! Could you provide some option similar to Themisto one to handle one fasta file that contain many sequence that should be considered of different colors? -e, --sequence-colors...
Once we have fixed all details for the format of the `./dump` command (text and binary output format for colored dBGs), we should support this instead of building with GGCAT...
I ran fulgor on broken input containing files that generate `WARNING: No newline at ending of file 'nonewline.fasta'` errors from ggcat and noticed that the index fulgor builds will be...
While working on https://github.com/conda-forge/staged-recipes/pull/28343 I created a pixi configuration for local dev, submitting here as a PR. This might help with #45 too, we use in some parts of [sourmash...
Hi @jermp, I was just wondering that it might be a good idea to include CI via Github Actions. Fulgor is at this point a great SW, but one limitation...
Hello, we'd like to plug Fulgor into a workflow that uses Snakemake to install automatically all packages/dependencies from Bioconda. However, Fulgor doesn't seem to be available on Bioconda, yet (https://bioconda.github.io/search.html?q=fulgor)....
Would it be possible to provide in the documentation some basic information about the evolution of the file format in the course of time / Fulgor versions + info on...
When using Fulgor in large-scale projects and eg copy / download of an index fails from any reason, Fulgor prints a message that's difficult to trace down to the original...
Hi Giulio, Thanks again for all the work on Fulgor. I really appreciate all the progressive innovations that have gone into it. It's really a great tool, both algorithm- and...