parasail-python
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jeffdaily
Python bindings for the parasail C library.
I want to do a SW alignment and get both a score, and a cigar as output. I have tried the following two methods using the latest pip installed version...
This issue concerns unexpected output when running parasail.nw_stat() and calling the alignment .length attribute. Consider the following alignment: > -- GG - - - - > AAGGAAAA One might expect...
Hello, while installing parasail-python bindings, the installation download hard-coded 'https://github.com/jeffdaily/parasail/archive/master.zip' wich is moving along the time. this may be problematic, as installation of the same version of parasail-python bindings along...
Hi, I'm performing semi-global alignments and I was wondering if there's any way to directly get the position of the beginning and end of the alignment on the reference ?...
This patch fixed my install issue. I have seen other people use symbolic links to fix the missing library issue. ln -s $EBROOTPARASAIL/lib/libparasail.so parasail/libparasail.so ``` diff -ruN parasail-1.1.16.orig/setup.py parasail-1.1.16/setup.py ---...
Hello, `pip install parasail` fails showing the following error: ``` Collecting parasail Using cached parasail-1.3.4.tar.gz (83 kB) Preparing metadata (setup.py) ... done Requirement already satisfied: numpy in /Users/masaaki/.pyenv/versions/miniforge3-4.10.3-10/envs/env_MultiplexNanopore_2/lib/python3.10/site-packages (from parasail)...
Is it possible to visualize the output of a traceback alignment as seen in C version? See below: --- For reference I'm running this alignment: `result = parasail.sw_trace(seq1, seq2, 5,...
Can't install parasail-python using conda in a Mac with the arm64 chip - the package is missing from bioconda. I know some bioconda recipes are missing for arm64. Not sure...
Hi, I have a problem with running the tool on my server, and it was very unclear to me what was happening. At first, I installed the package (via pip)...
