Remove Deprecated Methods in CodeDefinition Class

[DaSourcerer]

The methods incrementCounter(), decrementCounter(), resetCounter(), and getCounter() have been marked as deprecated for quite some time now and as far as I can tell, they are no longer touched by any code paths and are skewing code coverage statistics. I'd like to see them either removed or added to the code coverage blacklist. Thoughts?

Also, there's still setUseOption() and setParseContent(): These two do alter the behaviour of a CodeDefinition but are likewise marked as deprecated. What about them?