phandango

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Hi，I have 25 genome assembles available and find out the methods to prepare whole genome alignment files including mauve and parsnp. Unfornately all the output files are different from gubbin...

aslangabriel

Clarification of genome size presented

1

Hello, I have analyzed a collection of small pieces of DNA ~6100bp which only differs by a few basepairs in my collection. Using Roary and Prokka I identified 7 reading...

lauramataseje

Graph of recombination events algorithm

4

Hello, I have the data from gubbins gff file with coordinated (Start and Stop, and snp_count), I've downloaded this data and had the graph with peaks at the bottom. Could...

valery-shap

How can I color the branches of the tree directly as in the example？

2

Just like the first example in the example page in phandango：Gubbins + BRAT NextGen I try to use the example file ，but the branches of tree were not colored. I...

actledge

How to save complete image of a results

1

Hi, I have the results of accessory_binary_genes.fa.newick and gene_presence_absence.csv generated from roary. However, in the results at phandango the image is in different panels. Could you please let me know...

sekhwal

Hi, I have recently started using the Roary dependency on Galaxy Eu. I have been able to visualize small datasets with the phandango webpage but when using a large dataset...

MBinso

add scale bar

4

It would be great to be able to add a scale bar to the tree for publication figures. Best, Leo

leosanbu

Print screen causes tree width to reset

4

If you reduce the width of a tree using control zoom and then press p to print screen the tree jumps back to default width before printing to svg.

simonrharris

Scoary gwas output

1

Hi, I have the scoary gwas output and I was wondering if it is possible to add it to the phandango browser. If I cannot add it directly, any suggestion...

pavlo888

data cannot be displayed?

2

I'm using the gene_presence_absence.csv output from Roary. When I upload my file, I get an error saying "heads up, blocks provided without a tree, so this data cannot be displayed"....

korinalb