lagomorph
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jacobhinkle
Image Registration and Computational Anatomy in PyTorch
When I process 2D data, how should I organize the order of WHD? I note that you mention the dimensional order is NCDHW in beginning of README, while NCWH(D) in...
**Is your feature request related to a problem? Please describe.** This is not really a problem but would make for a nice demo. **Describe the solution you'd like** It would...
**Is your feature request related to a problem? Please describe.** Sometimes the loss jumps around after a large number of epochs during training. It would be nice to use a...
**Is your feature request related to a problem? Please describe.** When you are training an LDDMM atlas, if you don't set the parameters correctly, the loss can go to Nan....
**Is your feature request related to a problem? Please describe.** We currently have https://lagomorph.readthedocs.io/en/latest/ set up but there is no documentation yet. **Describe the solution you'd like** Add simple sphinx...
**Describe the bug** There are many times in our python code where we force tensors to be contiguous. This is because before pytorch introduced `packed_accessor` it was pretty annoying to...
**Is your feature request related to a problem? Please describe.** Trying to use mpirun less than version 3 with for example `lagomorph lddmm atlas` results in an error currently since...
**Is your feature request related to a problem? Please describe.** Basically, some of the main work in lagomorph was already implemented by the pytorch team. I was unaware of some...
We need a simple way to run benchmarks for our low level functions, in addition to the tests we have which just ensure correctness. What I have in mind is...
**Is your feature request related to a problem? Please describe.** Currently we can compose affine transforms using regular pytorch stuff, and we can compose displacement fields using `lm.interp`. It would...
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Image Registration and Computational Anatomy in PyTorch