SCPA

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@jackbibby1 ...I have been trying to dun your pseudotime codes in my own data. The data entered as per the instruction, but when I run the plot command this is...

Umaarasu

To do

5

- [x] Improve description of functions in ? - [x] Add heat map visualisation - [x] Add web page for visualisations - [x] Add function to deal with SingleCellExperiment objects...

jackbibby1

FC calculation in compare_pathways()

3

**What's going on** I want to find pathways regulated in HIV infected cell population compared healthy cell populations. I am able to run the analysis using the below code. I...

neogilab

Issue running "compare_pathways" in SCPA

1

**The specific error you're running into** Error in x$Genes : $ operator is invalid for atomic vectors **To Reproduce** The code to reproduce the error e.g. ``` library(SCPA) library(Seurat) library(tidyverse)...

ginamcneill

Fold Change Question

5

Hello, I am currently using SCPA on data from samples with Sars-CoV2, and there has been a few times other people have asked about the fold change output, but I...

ddemelfi

Issue with comapre_pathways

4

**> bm_neu[[i]]

Achiraa