graphmap
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GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which wi...
HI, I'm trying to install graphmap manually, after giving make command, facing the error **./src/alignment/alignment.h:20:10: fatal error: sequences/single_sequence.h: No such file or directory** I provided GCC 7.3 version, how to...
I used graphmap with the command as follows: ```shell $GRAPHMAP align \ -r $REF \ -i $IDX \ -d $FQ \ -t 20 \ --ambiguity 0.02 \ --secondary \ -o...
I'm currently trying to align some nanopore datasets to a reference composed of recA sequences from different prokaryotes. The default anchor algorithm works fine for all datasets I'm using, but...
Have been using Graphmap for my course project and have observed that the function "ConvertDataFormat" has an option to convert ascii index to a 2bit index and saw your test1.h...
Could you please let me know how to build index for say 10 bacterial genomes in graphmap? I understand how it is to be done for 1 genome.
The README.md says the latest version is v0.5.2, but I don't see a git tag for that version. It would make it easier for those of us installing graphmap into...
Is graphmap better than Minimap2 for ONT 1D R9.4.1 reads?
Hi, Graphmap failed to build index: ``` .... [08:33:21 BuildIndexes] Loading reference sequences. [08:34:27 SetupIndex_] Building the index for shape: '11110111101111'. [08:34:48 Create] Allocated memory for a list of 4901727095...
Hi, I am running into some issue when trying to use the --no-end2end option. This is the code that I had use: graphmap align -a anchorgotoh --no-end2end -r cp_nanopore.fa -d...
Hi. I am having trouble compiling GraphMap. This is what I did - Cloned the GraphMap repository using GIT to my desktop. Then I change dir to GraphMap folder. The...
