Cannot build from source [clang: error: unable to execute command: Segmentation fault: 11]

Open nickponline opened this issue 3 years ago • 0 comments

Checklist

[X] I have searched for similar issues.
[X] For Python issues, I have tested with the latest development wheel.
[X] I have checked the release documentation and the latest documentation (for master branch).

Steps to reproduce the issue

git clone https://github.com/isl-org/Open3D.git
cd Open3D
mkdir build && cd build
cmake ..
make

-- Setting build type to Release as none was specified.
-- CMAKE_BUILD_TYPE is set to Release.
-- Downloading third-party dependencies to /Users/nickp/Desktop/Open3D/3rdparty_downloads
CMake Deprecation Warning at CMakeLists.txt:183 (cmake_policy):
  The OLD behavior for policy CMP0072 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is AppleClang 13.0.0.13000029
-- The CXX compiler identification is AppleClang 13.0.0.13000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Open3D 0.15.2+c074f5d00
-- Found Python3: /Users/nickp/opt/anaconda3/envs/dev/bin/python3.7 (found suitable version "3.7.12", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed 
-- Performing Test FLAG_fstack_protector
-- Performing Test FLAG_fstack_protector - Success
-- Performing Test FLAG_Wformat
-- Performing Test FLAG_Wformat - Success
-- Performing Test FLAG_Wformat_security
-- Performing Test FLAG_Wformat_security - Success
-- Performing Test FLAGLINKER__dead_strip
-- Performing Test FLAGLINKER__dead_strip - Success
-- Performing Test FLAG____CONFIG_Release__LINKER__S__x_
-- Performing Test FLAG____CONFIG_Release__LINKER__S__x_ - Success
-- Using security hardening compiler flags: $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=-fstack-protector,-Wformat,-Wformat-security>;$<$<COMPILE_LANGUAGE:CXX>:-fstack-protector;-Wformat;-Wformat-security>
-- Using security hardening linker flags: $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=LINKER:-dead_strip,$<$<CONFIG:Release>:LINKER:-S,-x>>;$<$<COMPILE_LANGUAGE:CXX>:LINKER:-dead_strip;$<$<CONFIG:Release>:LINKER:-S,-x>>
-- Using security hardening compiler definitions: _FORTIFY_SOURCE=2
-- Performing Test FLAG_load_hidden
-- Performing Test FLAG_load_hidden - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Using installed third-party library 3rdparty_threads 
-- Found OpenMP_C: -Xclang -fopenmp (found version "5.0") 
-- Found OpenMP_CXX: -Xclang -fopenmp (found version "5.0") 
-- Found OpenMP: TRUE (found version "5.0")  
-- Using installed third-party library 3rdparty_openmp 
-- Building with OpenMP
-- Building library 3rdparty_glfw from source
-- Could NOT find Vulkan (missing: VULKAN_LIBRARY VULKAN_INCLUDE_DIR) 
-- Using Cocoa for window creation
-- Building third-party library JPEG from source
-- Looking for a ASM_NASM compiler
-- Looking for a ASM_NASM compiler - NOTFOUND
-- NASM assembler not found - libjpeg-turbo performance may suffer
-- libturbojpeg: WITH_CRT_DLL=OFF
-- pybind11 v2.6.2 
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Performing Test HAS_FLTO_THIN
-- Performing Test HAS_FLTO_THIN - Success
-- Building third-party library Filament from source
-- Found OpenGL: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.1.sdk/System/Library/Frameworks/OpenGL.framework   
-- Using installed third-party library 3rdparty_opengl 
-- Building OpenBLAS with LAPACK from source
-- gfortran found at 
-- OPENBLAS_INCLUDE_DIR: /Users/nickp/Desktop/Open3D/build/openblas/include/openblas/
-- OPENBLAS_LIB_DIR /Users/nickp/Desktop/Open3D/build/openblas/lib
-- OPENBLAS_LIBRARIES: openblas
CMake Warning at 3rdparty/find_dependencies.cmake:1715 (message):
  IPP-ICV disabled: Unsupported Platform.
Call Stack (most recent call first):
  CMakeLists.txt:486 (include)


-- open3d_sycl_target_sources(core): PRIVATE
-- PYPI_PACKAGE_NAME: open3d
-- ================================================================================
-- Open3D 0.15.2 Configuration Summary
-- ================================================================================
-- Enabled Features:
--   OpenMP .................................. ON
--   Headless Rendering ...................... OFF
--   Azure Kinect Support .................... OFF
--   Intel RealSense Support ................. OFF
--   CUDA Support ............................ OFF
--   SYCL Support ............................ OFF
--   ISPC Support ............................ OFF
--   Build GUI ............................... ON
--   Build WebRTC visualizer ................. OFF
--   Build Shared Library .................... OFF
--   Build Unit Tests ........................ OFF
--   Build Examples .......................... ON
--   Build Python Module ..................... ON
--   Build Jupyter Extension ................. OFF
--   Build TensorFlow Ops .................... OFF
--   Build PyTorch Ops ....................... OFF
--   Build Benchmarks ........................ OFF
--   Bundle Open3D-ML ........................ OFF
--   Force GLIBCXX_USE_CXX11_ABI= ............ 0
-- ================================================================================
-- Third-Party Dependencies:
--   Assimp .................................. yes (build from source)
--   BLAS .................................... yes (build from source)
--   Eigen3 .................................. yes (build from source)
--   filament ................................ yes (build from source)
--   fmt ..................................... yes (build from source)
--   GLEW .................................... yes (build from source)
--   GLFW .................................... yes (build from source)
--   googletest .............................. no
--   imgui ................................... yes (build from source)
--   ippicv .................................. no
--   JPEG .................................... yes (build from source)
--   jsoncpp ................................. yes (build from source)
--   liblzf .................................. yes (build from source)
--   msgpack ................................. yes (build from source)
--   nanoflann ............................... yes (build from source)
--   OpenGL .................................. yes
--   PNG ..................................... yes (build from source)
--   qhullcpp ................................ yes (build from source)
--   librealsense ............................ no
--   TBB ..................................... yes (build from source)
--   tinyfiledialogs ......................... yes (build from source)
--   TinyGLTF ................................ yes (build from source)
--   tinyobjloader ........................... yes (build from source)
--   WebRTC .................................. no
--   ZeroMQ .................................. yes (build from source)
-- ================================================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/nickp/Desktop/Open3D/build

Error message

...
Consolidate compiler generated dependencies of target tgeometry_kernel
[ 59%] Building CXX object cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/PointCloudCPU.cpp.o
clang: error: unable to execute command: Segmentation fault: 11
clang: error: clang frontend command failed due to signal (use -v to see invocation)
Apple clang version 13.0.0 (clang-1300.0.29.30)
Target: arm64-apple-darwin20.5.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
clang: note: diagnostic msg: 
********************

PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
Preprocessed source(s) and associated run script(s) are located at:
clang: note: diagnostic msg: /var/folders/s_/860y7j9n1dq7z59yl0k7fgsr0000gn/T/PointCloudCPU-67c923.cpp
clang: note: diagnostic msg: /var/folders/s_/860y7j9n1dq7z59yl0k7fgsr0000gn/T/PointCloudCPU-67c923.sh
clang: note: diagnostic msg: /var/folders/s_/860y7j9n1dq7z59yl0k7fgsr0000gn/T/PointCloudCPU-67c923.crash
clang: note: diagnostic msg: 

********************
make[2]: *** [cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/PointCloudCPU.cpp.o] Error 254
make[1]: *** [cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/all] Error 2
make: *** [all] Error 2

Open3D, Python and System information

- Operating system: macOS 11.4
- Python version: 3.7.12 | packaged by conda-forge | [Clang 11.1.0 ]
- Open3D version: master
- System architecture: Apple M1 (arm64)
- Is this a remote workstation?: No
- How did you install Open3D?: build from source
- Compiler version:

(dev) [nickp@m1 build (master)]$ clang -v 
Apple clang version 13.0.0 (clang-1300.0.29.30)
Target: arm64-apple-darwin20.5.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

Sep 20 '22 18:09 nickponline