bio_data_guide
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Finalizing ATN to OBIS-USA notebook
moving ATN translation code from R (.qmd file) to a jupyter notebook in Python.
The notebook:
- Pulls source netCDF data directly from NCEI.
- Ingests netCDF data and translates to DarwinCore format
- Creates applicable eml metadata.
- Creates applicable file column mapping xml file.
- Zips everything together into a compliant DwC Archive package.
- Allows the DwC Archive package to be uploaded to OBIS-USA IPT programmatically.
- Allows updating of eml metadata, setting of publisher, and registration with GBIF programmatically.
Closes #145
Add error checking for if we push new data structure. What happens on the IPT when we push incorrect stuff.
Lots of error checking needed here.
I know, I know, I keep moving things around. But, that's how things evolve, right?!
With the help of @ocefpaf, we started porting this notebook over into a python package. I think I'd like the bio_data_guide (this PR) to have a notebook that shows how to run the package we will develop. That makes this example much simpler and we don't loose the connection to the collection.