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[dataset]: Laurentian Great Lakes 'omics datasets

Open akiledal opened this issue 2 years ago • 1 comments

Contact details

[email protected]

Dataset Title

Lake Erie Harmful Algal bloom associated communities

Describe your dataset and any specific challenges or blockers you have or anticipate.

These datasets include metagenomic and/or 16S amplicon summary tables from Western Lake Erie samples. The main blockers I anticipate are getting the data formatted correctly (knowing what standards to use) and learning how to actually submit the data--particularly if there are programatic interfaces for submission.

Info about "raw" Data Files.

The raw data is currently in a series of tables describing the abundance of features (e.g. taxonomic ids) in samples, taxonomic information for features, and metadata about samples.

akiledal avatar Jan 23 '24 13:01 akiledal

Thank you for identifying this dataset for mobilization. The workshop hosts wanted to check in. Is there anything you need help with in order to mobilize this dataset to OBIS? If you would like assistance from an OBIS node you can find node contacts listed here.

github-actions[bot] avatar Apr 24 '24 12:04 github-actions[bot]