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Can we get the exact sequence of clustTCR?

Open linqy-immune opened this issue 10 months ago • 2 comments

Hi @Alexander230 , Thank you very much for developing this excellent tool. I like it and appreciate your work a lot! I just used the "Cluster" function attempting to find the overlap CDR3aa in a group of repertoires, but I found that although I have come to "clustTCR" step and get the return list, I still can't get the certain information including CDR3aa of the same cluster from "clustTCR". Is there a limitation that we can only analyze Clustering by one sample/repertoire? The plot exhibited on the immunarch website only contains "cluster size destribution", is there any other method for me to explore this function like visualizing V/J gene or aa? I am so sorry to ask such questions and hope to get your help. Thanks and best regards, Linqy

linqy-immune avatar Apr 20 '25 12:04 linqy-immune

Hi @linqy-immune , I'm afraid I must say that it is better to wait for the next version #432 . I'm sorry that you got into the immunarch right in the middle of a huge rewriting of it 😿

vadimnazarov avatar Apr 22 '25 18:04 vadimnazarov

Ahhhh, what a pity! But I appreciate your meaningful work, and I deeply expect and wait for the awesome new version as I saw that the new version is coming soon!

linqy-immune avatar Apr 23 '25 00:04 linqy-immune