presto
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immunogenomics
Fast Wilcoxon and auROC
Hi, I just upgraded R to 4.0.0 and try to install this package, but there is an error I couldn't resolve: ``` installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-presto/00new/presto/libs ** R ** data **...
Hi, this is really a practical tool! I was wondering if python users(scanpy users) could benefit from this, particularlly when Seurat can not handle million-scale cells caused by a known...
Hi, Thank you for your work- it is really remarkable. Not sure if this is a bug or a feature, but when doing a comparison between presto::wilcoxauc and Seurat::FindMarkers I...
Hi, thanks for developing this. I'm having an issue with installing due to the following error (Windows 10): ``` > devtools::install_github('immunogenomics/presto', dependencies=FALSE) Downloading GitHub repo immunogenomics/presto@HEAD ── R CMD build...
Hi team, Thanks for the incredibly fast implementation. I have been trying to clone the repo and learn from the code. When I was trying to extend it from a...
Hello, I have a very large single cell dataset that must be saved using HDF5 storage due to high RAM usage. To do this, I'm using the HDF5Array package with...
Seems like `wilcoxauc()` silently returns incorrect results when data has missing values: library(presto) set.seed(14) x
Hi The link [vignette](https://austinhartman.github.io/presto/articles/getting-started.html) was broken. Please, could you please fix it? Thank you, Debora
Hello, I'm getting the following error when I run wilcoxauc() DEG=wilcoxauc(sub.compare, 'treatment', seurat_assay='RNA', assay='data') ############### Error in `dplyr::select()`: ! :1:5: unexpected symbol 1: Use of ^ rlang::last_error() ################ I had...
Dear all, in another context than scRNAseq I have (large) sample-by-feature matrices which I would like to run wilcoxauc on. Since, they are sample-by-feature, transposation is required to run wilcoxauc...
