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verified publisher icon immunogenomics

integrating snRNA (from multiome dataset) with scRNA public dataset

Open Urja25 opened this issue 1 year ago • 1 comments

Hi,

I tried integrating three PBMC snRNAseq data from 10X Genomics multiome datasets with two scRNA seq data from a 10X Genomics Public dataset. However, all the data from the multiome clusters separately from the scRNAseq data. How can I remove batch effects in this case?

Thanks a lot!

Urja25 avatar Sep 05 '24 08:09 Urja25

Are you using only snRNAseq? Is everything PBMC? Can you provide a walkthrough of your analysis?

pati-ni avatar Oct 23 '24 19:10 pati-ni