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Use ImageJ from Python
Dear PyImageJ team, I am currently trying to use PyImageJ on a local linux server with the hope of analysing some z-stack data using TrackMate. I mmanaged to install PyImageJ...
I have started experimenting with the python wrapper for ImageJ and I have come across a couple of issues: when initialising with the following: ij=imagej.init(mode='gui') ij appears to be an...
Following [this post](https://forum.image.sc/t/running-local-plugin-on-colab/73414), I successfully downloaded Maven & OpenJDK (Linux version since Colab is on Linux) to Colab and set the corresponding environment variables (`JAVA_HOME` points to the corresponding jdk...
It's simpler than our current recommendations. See also https://github.com/imagej/pyimagej/issues/121#issuecomment-1089409309
Hi, I am wondering if it's possible to support passing a file-like object with from python to imagej. The goal is to supporting lazy loading of large files that potentially...
And respond to [this forum thread](https://forum.image.sc/t/load-only-part-of-an-image/23591) with a link.
With `ByteBuffer.allocateDirect` you can allocate memory off-heap in Java, which can then be shared with other processes. We want to easy manufacturing of numpy arrays and xarrays that wrap this...
Naively, this means writing a Python-side class that implements e.g. `Img` or `Dataset` or whatever interface, providing all the methods, but backed by the Python-side arraylike object. No memory shenanigans....
@ctrueden noted that `codecov.yml` slipped into the source distribution. This means that the `MANIFEST.in` I wrote with the intent of being declarative is not declarative enough :sweat_smile: We should fix...
Hello @ctrueden , Hello again! I'm the same guy from https://github.com/imagej/pyimagej/issues/176 I put a comment there, but I guess because that issue has been resolved, it did not get highlighted....
