HLA
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humanlongevity
xHLA: Fast and accurate HLA typing from short read sequence data
Hello, @tanghaibao! I run [run.py](https://github.com/humanlongevity/HLA/blob/master/bin/run.py) with option `--full` and without this option and I got absolutely identical results: only 4-digits (as default). Can option `--full` work correctly? Can you help...
Hello, I would like to ask if xHLA is also capable of typing the alpha chains of DQ and DP. This information would be useful for predicting the immunogenicity of...
docker run -v pwd:pwd -w pwd humanlongevity/hla --sample_id 'SU-DIPG_24' --input_bam_path SU-DIPG-24.bam --output_path myoutput [31/Jul/2022 11:37:10] INFO - Xie Chao's HLA typing algorithm [31/Jul/2022 11:37:10] INFO - Sample_id: SU-DIPG_24 Input file:...
Hello all, I have no root access and I could not use docker. Could I use this software without docker ? How did I install it? Thank you!
The multiple sequence alignments in the `data` folder are almost 2 years old. Since then, many new alleles have been discovered and recorded in IMGT/HLA and existing alleles have been...
Thank you very much for creating xHLA ! - Is there a discussion about the output values? The PNAS publication suggests that some of these are measures of how well...
Hello! Thank you for this great tool! I think there is an error when I run xHLA on some the bam-file with the alignment of target reads. It is some...
Hello, I decided to check an reproducibility of results HLA-typing by xHLA. I run xHLA on one sample 10 times and , unfortunately, I got different results. I can suggest...
Because my bamfile were generated from HISAT2, I tried to convert them first using get-reads-alt-unmap.sh ./get-reads-alt-unmap.sh inbam outbam Then there are a lot of warnings and finally an error message:...
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xHLA: Fast and accurate HLA typing from short read sequence data