RegNet

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Performance issues in functions/registration/multi_stage.py(P2)

1

Hello,I found a performance issue in `functions/registration/multi_stage.py` , [sess = tf.Session()](https://github.com/hsokooti/RegNet/blob/28a8b6132677bb58e9fc811c0dd15d78913c7e86/functions/registration/multi_stage.py#L231) was repeatedly called in [for i_stage, stage in enumerate](https://github.com/hsokooti/RegNet/blob/28a8b6132677bb58e9fc811c0dd15d78913c7e86/functions/registration/multi_stage.py#L89) and was not closed. I think it will increase the...

DLPerf

how to adjust the landmark after resampling the origin image

2

1

YMBrianHung

where do we download data (SPREAD (Stolk et al., 2007) in your paper?

4

Dear @hsokooti and everyone, I followed your paper and your paper used three datasets. They included: 1) SPREAD (Stolk et al., 2007) 2) 3) DIR-Lab-4DCT and DIR-Lab-COPD Where website can...

tphankr

What's the difference between the "index_tr_new_address_list", "index_elx_new_address_list", "point_tr_new_address_list" and "point_elx_new_address_list"

1

Do I haven't to use the "index_elx_new_address_list" and "point_elx_new_address_list" if I don't want to use the elastix?

mtcluo

Do I need to adjust the landmark coordinate after I resample the origin image?

1

Do I need to adjust the landmark coordinate after I resample the origin image?

mtcluo

Why “The superior-inferior axis needs to be flipped”

1

What's the meaning of "The superior-inferior axis needs to be flipped"? Why have to do that?

mtcluo

estimates the DVF from a pair of input images

5

Thanks for sharing the source code which is super helpful for understanding the method. Based on my understanding the network takes patches as input. May I ask how to estimate...

Q-Z-Y

DIR-lab 4DCT dataset

4

I'm trying to load the DIR-lab 4DCT dataset, but I've run into some trouble. I downloaded the dataset from dir-lab.com, and applied the following pre-processing steps: > -downloaded all 10...

markemus

Loading data?

2

Hi @hsokooti I'm having trouble figuring out how to preprocess and load data into the net. I saw [your post](https://github.com/hsokooti/RegNet/issues/5#issuecomment-420634309) linking some datasets, but the model seems to load *.mha...

markemus

ImportError: No module named 'functions.RegNetModel.crop1_connection'

1

``` Traceback (most recent call last): File "/usr/lib/python3.5/runpy.py", line 184, in _run_module_as_main "__main__", mod_spec) File "/usr/lib/python3.5/runpy.py", line 85, in _run_code exec(code, run_globals) File "/home/markemus/dev/RegNet/RegNet3D.py", line 17, in import functions.RegNetModel as...

markemus