undefined symbol: PyUnicodeUCS2_Format

Open werhoog opened this issue 7 years ago • 1 comments

Hi,I am trying to use iced module to normalized Hi-C data.However , there is something wrong 'ImportError: ……/anaconda2/lib/python2.7/site-packages/iced/normalization.so: undefined symbol: PyUnicodeUCS2_Format make: *** [ice_norm]' What does that error mean?How can I fix it? Thanks!

Mar 10 '18 02:03 werhoog

Hi @werhoog Sorry for the very slow reply. I'm missed the email notification.

this looks like a compilation issue: iced was not compiled with the same options as python. It's a fairly rare error, and I see you are using anaconda and not a manually compiled python, so I'm not sure why that would happen. I think that by reinstalling iced, the compilation flags should be set coherently across everything.

May 02 '18 15:05 NelleV