flowdec

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Impractical GPU memory requirements

4

While indeed extremely fast, the GPU memory requirement is impractical on my setup: about 8 GB for a 1024x1024x19 image (16-bit) and a tiny 32x32x16 PSF. For images slightly above...

SebastienTs

Lightsheet Processing

6

Hi Eric, I manage to established the pipeline using flowdec to deconvolved the lighthsheet images, but I am observing that for each channel and block the tensorflow enviorment is reload....

jesusdpa1

Tensorflow is supposed to run with them. Do we absolutely need nvidia/CUDA? Thanks in advance.

joaomamede

Bumps [junit](https://github.com/junit-team/junit4) from 4.3.1 to 4.13.1. Release notes Sourced from junit's releases. JUnit 4.13.1 Please refer to the release notes for details. JUnit 4.13 Please refer to the release notes...

dependabot[bot]

Installing flowdec[gpu] on Windows10 causes "Win10: ImportError: DLL load failed: The specified module could not be found"

6

installing both tensorflow and flowdec through the pip install instructions results in the above problem. This is a tensorflow problem and can be solved by rolling back the CUDA install...

bryantChhun

figure out adding new algorithms / how to smooth

4

Hi folks, this isn't a proper pull request - i totally don't expect anyone to accept this code as is, since it would break everything. Rather, you can see that...

chalkie666

Batch Input Operation Question

8

Hi, I try your code recently and it works well and fast. Thanks! However, I really need to do some simple deconvolution process for thousands of times. This means I...

thudepwcp13

In: https://github.com/hammerlab/flowdec/blob/81e70927e86a3adeff7bbf0eeabad9f923109b7e/python/flowdec/restoration.py#L245 The shape differences are summed but it should be the sum of comparison to 0 (or reduce_max)

eric-czech

While experimenting with `real_domain_fft` I noticed that this has different input shape requirements compared to `complex_domain_fft`. As a result, `pad_modes` in `['none', '2357']` will throw an error for some input...

VolkerH

windowing and type conversion possbile using `input_prep_fn`, `output_prep_fn` ?

7

Hi, I'm just trying to get into tensorflow to be able to modify flowdec to my needs. There are two things I am trying to achieve: 1. do input and...

VolkerH